Konstantinos Ampatzis
Research
A defining feature of the nervous system is its remarkable plasticity, the lifelong capacity of neural circuits to adapt to internal and external changes. Understanding how neurons respond to environmental and physiological challenges is central to our research. Our work focuses on uncovering the mechanisms that allow neural circuits to reorganize, maintain function, and support behavior under both normal and pathological conditions. By studying the organization and dynamics of vertebrate neural circuits, we aim to identify the cellular and molecular principles that govern neural plasticity and its functional consequences.
A major focus of our research is to understand how the nervous system contributes to tissue repair and regeneration. In humans, the ability to regenerate damaged organs such as the spinal cord or the heart is extremely limited. In contrast, organisms such as the zebrafish possess a remarkable capacity to regenerate complex tissues after injury. Following damage to the nervous system or the heart, zebrafish can restore structure and function within weeks. Increasing evidence indicates that neurons play an instructive role in regeneration, releasing molecular signals that regulate stem and progenitor cell activity, stimulate cell proliferation, and coordinate tissue repair.
Our goal is to identify the cellular and molecular mechanisms through which neural activity and neuronal signaling guide regenerative processes. By understanding how neuronal circuits promote tissue repair in regenerative species, we aim to uncover principles that may ultimately inform strategies to enhance regeneration in the human nervous system.
To address these questions, we take advantage of the experimental accessibility and powerful regenerative capacity of the adult zebrafish model. Our research integrates a broad range of state-of-the-art approaches, including functional imaging, electrophysiology, molecular neuroscience, genetics, pharmacology, anatomy, and behavior, to dissect neural circuit function and plasticity at multiple levels. This multidisciplinary strategy allows us to identify key neuronal populations, characterize their dynamic responses to injury, and determine how neural circuits influence regeneration and recovery.
Together, our work seeks to advance the fundamental understanding of how nervous systems adapt, reorganize, and regenerate, with the long-term goal of identifying new therapeutic strategies for neurological and organ repair.
Selected publications
- Journal article: SCIENCE ADVANCES. 2026;12(10):eaea2882Lafouasse L; Koutsogiannis K; Dai Y-WE; Del Vecchio L; Pedroni A; Tsagkogiannis D; Habicher J; Ampatzis K
- Article: NATURE COMMUNICATIONS. 2024;15(1):10483Pedroni A; Yilmaz E; Del Vecchio L; Bhattarai P; Vidal IT; Dai Y-WE; Koutsogiannis K; Kizil C; Ampatzis K
- Article: NATURE COMMUNICATIONS. 2024;15(1):4331Pedroni A; Dai Y-WE; Lafouasse L; Chang W; Srivastava I; Del Vecchio L; Ampatzis K
- Article: ELIFE. 2023;12:e79672Pose-Mendez S; Schramm P; Winter B; Meier JC; Ampatzis K; Koester RW
- Article: NATURE COMMUNICATIONS. 2021;12(1):4857Chang W; Pedroni A; Bertuzzi M; Kizil C; Simon A; Ampatzis K
- Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2020;117(29):17330-17337Chang W; Pedroni A; Hohendorf V; Giacomello S; Hibi M; Koester RW; Ampatzis K
- Article: PLOS BIOLOGY. 2020;18(1):e3000585Bhattarai P; Cosacak MI; Mashkaryan V; Demir S; Popova SD; Govindarajan N; Brandt K; Zhang Y; Chang W; Ampatzis K; Kizil C
- Article: ISCIENCE. 2019;19:1189-1201Pedroni A; Ampatzis K
- Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2018;115(42):E9926-E9933Bertuzzi M; Chang W; Ampatzis K
Articles
- Article: ISCIENCE. 2023;26(1):105857Sylven C; Wärdell E; Mänsson-Broberg A; Cingolani E; Ampatzis K; Larsson L; Björklund A; Giacomello S
- Article: GENE EXPRESSION PATTERNS. 2022;44:119246Habicher J; Manuel R; Pedroni A; Ferebee C; Ampatzis K; Boije H
- Article: SCIENTIFIC REPORTS. 2021;11(1):18408Chang W; Pedroni A; Koster RW; Giacomello S; Ampatzis K
- Article: BRAIN. 2021;144(5):1422-1434Wiessner M; Maroofian R; Ni M-Y; Pedroni A; Muller JS; Stucka R; Beetz C; Efthymiou S; Santorelli FM; Alfares AA; Zhu C; Meszarosova AU; Alehabib E; Bakhtiari S; Janecke AR; Otero MG; Chen JYH; Peterson JT; Strom TM; De Jonghe P; Deconinck T; De Ridder W; De Winter J; Pasquariello R; Ricca I; Alfadhel M; van de Warrenburg BP; Portier R; Bergmann C; Firouzabadi SG; Jin SC; Bilguvar K; Hamed S; Abdelhameed M; Haridy NA; Maqbool S; Rahman F; Anwar N; Carmichael J; Pagnamenta A; Wood NW; Mau-Them FT; Haack T; Di Rocco M; Ceccherini I; Iacomino M; Zara F; Salpietro V; Scala M; Rusmini M; Xu Y; Wang Y; Suzuki Y; Koh K; Nan H; Ishiura H; Tsuji S; Lambert L; Schmitt E; Lacaze E; Kuepper H; Dredge D; Skraban C; Goldstein A; Willis MJH; Grand K; Graham JMJ; Lewis RA; Millan F; Duman O; Dundar N; Uyanik G; Schols L; Nuernberg P; Nuernberg G; Bordes AC; Seeman P; Kuchar M; Darvish H; Rebelo A; Boucanova F; Medard J-J; Chrast R; Auer-Grumbach M; Alkuraya FS; Shamseldin H; Al Tala S; Varaghchi JR; Najafi M; Deschner S; Glaeser D; Huettel W; Kruer MC; Kamsteeg E-J; Takiyama Y; Zuchner S; Baets J; Synofzik M; Schuele R; Horvath R; Houlden H; Bartesaghi L; Lee H-J; Ampatzis K; Pierson TM; Senderek J
- Article: NEURON. 2020;105(6):1048-1061.e4Song J; Pallucchi I; Ausborn J; Ampatzis K; Bertuzzi M; Fontanel P; Picton LD; El Manira A
- Article: BRAIN STRUCTURE & FUNCTION. 2018;223(5):2181-2196Berg EM; Bertuzzi M; Ampatzis K
- Article: SCIENTIFIC REPORTS. 2018;8(1):1988Bertuzzi M; Ampatzis K
- Article: BEHAVIOURAL BRAIN RESEARCH. 2016;312:385-393Ampatzis K; Dermon CR
- Article: NATURE. 2016;529(7586):399-402Song J; Ampatzis K; Bjoernfors ER; El Manira A
- Article: CURRENT BIOLOGY. 2015;25(20):2610-2620Song J; Ampatzis K; Ausborn J; El Manira A
- Article: NEURON. 2014;83(4):934-943Ampatzis K; Song J; Ausborn J; El Manira A
- Article: JOURNAL OF NEUROSCIENCE. 2014;34(1):134-139Ljunggren EE; Haupt S; Ausborn J; Ampatzis K; El Manira A
- Article: JOURNAL OF NEUROSCIENCE. 2013;33(26):10875-10886Ampatzis K; Song J; Ausborn J; El Manira A
- Article: NEUROSCIENCE. 2012;226:367-381Ampatzis K; Makantasi P; Dermon CR
- Article: NATURE NEUROSCIENCE. 2011;14(1):93-99Gabriel JP; Ausborn J; Ampatzis K; Mahmood R; Eklof-Ljunggren E; El Manira A
- Article: JOURNAL OF COMPARATIVE NEUROLOGY. 2010;518(9):1418-1441Ampatzis K; Dermon CR
- Article: AQUACULTURE NUTRITION. 2008;14(5):405-415Chatzifotis S; Kokou F; Ampatzis K; Papadakis IE; Divanach P; Dermon CR
- Article: BULLETIN OF THE EUROPEAN ASSOCIATION OF FISH PATHOLOGISTS. 2005;25(1):28-31Katharios P; Papadakis IE; Prapas A; Dermon CR; Ampatzis K; Divanach P
All other publications
- Review: BIOLOGICAL PSYCHIATRY. 2025;98(3):195-207Tsikonofilos K; Kumar A; Ampatzis K; Garrett DD; Mansson KNT
- Meeting abstract: MECHANISMS OF DEVELOPMENT. 2009;126:S189Kelly CE; Ampatzis K; Tanaka S; Dixon JE; Tam W; Episkopou V
- Review: JOURNAL OF COMPARATIVE NEUROLOGY. 2008;508(1):72-93Ampatzis K; Kentouri M; Dermon CR
- Review: EUROPEAN JOURNAL OF NEUROSCIENCE. 2007;25(4):1030-1040Ampatzis K; Dermon CR
Grants
- Swedish Heart-Lung Foundation1 January 2026 - 31 December 2028Bakgrund: Cardiovascular homeostasis is vital for vertebrates, requiring dynamic regulation of heart function. The autonomic nervous system (ANS), traditionally seen as a balance between sympathetic and parasympathetic branches, modulates heart rate. However, this view overlooks the complexity of cardiac control. Recent work from the Ampatzis lab has identified the intracardiac nervous system (IcNS) a network of neurons on the heart's surface as a critical yet underexplored regulator of cardiac activity. These neurons, some pacemaker-like, modulate heart rhythm and may adapt following injury. We hypothesize that IcNS dysfunction contributes to age-related cardiovascular decline and neurodegeneration, yet the mechanisms behind its plasticity and role in ageing remain unknown. Målsättning: We aim to investigate the role of IcNS in heart repair and age-associated cardiac dysfunction. 1. Define IcNS plasticity following heart injury and its role in cardiac regeneration Hypothesis: Cardiac injury triggers IcNS remodeling, leading to the release of specific signaling molecules that promote cardiomyocyte proliferation and heart repair. Expected Outcome: Identification of neurogenic pathways essential for regeneration. 2. Examine how ageing affects IcNS neurons and their function. Hypothesis: Ageing impairs IcNS structure and function, disrupting autonomic control and exacerbating dysfunction. Expected Outcome: Identification of ageing-related genes and pathways affecting regeneration. Arbetsplan: We will use a multidisciplinary strategy combining anatomy, physiology, genetics, and advanced imaging. Induce heart injury to study IcNS remodeling. Use neurochemical profiling and electrophysiology to characterize repair-related neurons. Apply optogenetics, ablation, and pharmacological tools to modulate IcNS activity and evaluate effects on regeneration. Perform longitudinal analyses to track IcNS changes with age. Use single-cell transcriptomics and functional assays to identify age-related dysfunction. Correlate IcNS decline with cardiovascular pathology to explore links to neurodegeneration. Betydelse: This study will define the IcNS as a key player in cardiac health and ageing. It will identify new therapeutic targets, connect neurodegeneration with heart disease, and establish zebrafish as a model for neural plasticity and repair laying a foundation for future cardiac therapies.
- Swedish Research Council1 January 2025 - 31 December 2028Spaceflight represents an extreme environment, characterized by microgravity and space radiation, offering the possibility to study brain plasticity under abnormal conditions. Previous studies have indicated that spaceflight alters the human gene expression. In addition, a recent study from our laboratory has identified that space travel affect cellular mechanisms in mouse brain that are known to be involved in pathophysiological conditions like neurodegenerative disorders.This project aims to discover new insights relatively to brain adaptability leveraging spaceflight as an extreme environment. We will reveal the detailed molecular alterations induced by space travel on brain by studying unique samples deriving from mice that were flown on the International Space Station. To this end, we will employ state-of-the-art technologies, i.e., single-cell multiomics, Spatial Transcriptomics and spatial mass spectrometry, to decode the alterations of the brain molecular programs caused by permanence in space. Moreover, we will compare the detected molecular signatures to the ones observed in brains of Parkinson´s disease mouse models.Overall, this study holds the potential to provide novel insights to formulate new and fundamental hypotheses on brain plasticity opening up new strategies to improve human wellbeing and life quality.
- Neuronal neurotransmitter plasticity: a noninvasive approach to preventing degenerationSwedish Research Council1 January 2021 - 31 December 2024
- Swedish Research Council1 December 2020 - 30 November 2026An essential determinant of a neuron’s functionality is its neurotransmitter phenotype. While the prevailing view is that neurotransmitters are fixed and determined during development, our previous work in zebrafish supports a growing body of evidence suggests that neurons retain the ability to switch between different neurotransmitters. In the context of this research proposal, we will address the critical question: Do changes in neurotransmission can contribute to spinal cord regeneration after the injury? The architecture, connectivity, and plasticity of spinal circuits may hold the answer to this fundamental question. For this, we will take a multidisciplinary approach that combines an innovative and comprehensive set of state-of-the-art techniques from systems neuroscience and the stem cell research fields, in adult zebrafish. An animal model with extensive regeneration capacity providing an experimentally tractable system for electrophysiology, pharmacology, anatomy, molecular profiling, and genetics. By a combination of these methods, we will explore the neuronal and non-neuronal functions of spinal neurotransmission and its dynamics during spinal cord restoration. We expect our results to reveal new principles of neuroplasticity with a significant impact on our understanding of the normal and pathological state of the central nervous system. Hence, our overall objective is to promote spinal cord regeneration and reinstate normal locomotor behavior.
- Cerebellum, Simple System with Complex Functions inHealth and Disease: New Roles of the Cerebellum in Pathophysiology of AutismBrain & Behavior Research Foundation15 January 2018 - 14 January 2020
- Adaptive phenomena in locomotor networks: Impact of plasticity mechanisms on neuromuscular disordersSwedish Research Council1 January 2016 - 31 December 2019
- Swedish Research Council1 January 2012 - 31 December 2013
Employments
- Principal Researcher, Department of Neuroscience, Karolinska Institutet, 2022-
- Researcher, Department of Neuroscience, Karolinska Institutet, 2020-2022
- Assistant Professor, Department of Neuroscience, Karolinska Institutet, 2016-2019
Degrees and Education
- Docent, Karolinska Institutet, 2022
