Onur Dagliyan
About me
Dr. Onur Dagliyan is a neuroscientist with a background in biophysics and bioengineering, dedicated to bridging spatiotemporal scales from molecular dynamics to neural circuits in order to understand neuroplasticity and remedy impaired neuroplasticity in neurological diseases. A cornerstone of Dr. Dagliyan’s research is the development of the concept of extrinsic order and disorder in proteins, a framework that elucidates how cellular signals regulate order-to-disorder and disorder-to-order transitions in protein organization and function. Dr. Dagliyan has created platforms that leverage these extrinsic order/disorder mechanisms to control protein conformations with light or small molecules in vivo. By applying these concepts, his research group at the Karolinska Institute aims to reveal the fundamental mechanisms of neuroplasticity underlying learning and memory.
Education & Training
Research fellow in the laboratory of Michael Greenberg, Harvard Medical School, Boston, USA. Specialization: Molecular neurobiology
Ph.D. in Biochemistry and Biophysics, UNC School of Medicine, Chapel Hill, USA. Specialization: Protein signaling and engineering
B.S, and M.S. in Chemical and Biological Engineering, Koç University, Istanbul. Specialization: Machine learning, drug screening, molecular clock
Grants&Awards:
European Research Council (ERC) Starting Grant
Swedish Research Council (Vetenskapsrådet) Svenska Sällskapet för Medicinsk Forskning (SSMF)
The Swedish Brain Foundation (Hjärnfonden)
The Strategic Research Area Neuroscience (StratNeuro)
Karolinska Institutet Allocation GrantGoldenson Fellow 2020
William Randolph Hearst Fund 2019-2020
Alice and Joseph Brooks Postdoctoral Fellowship 2017-2018
Advanced imaging certificate from Max Planck Institute of Neuroscience 2017
UNC Lineberger Graduate Fellow of the Year 2014
Howard Hughes Medical Institute Predoctoral Fellowship 2012-2015
National Science Foundation- Materials Computation Center Travel Award 2012
Director’s Award from the Biological and Biomedical Sciences Program, UNC 2010
Research
Current Interest: Molecular neurobiology, neural circuits, neuronal plasticity, protein engineering, biosensors, molecular optogenetics, extrinsic order and disorder
Lab website: https://ki.se/en/research/groups/dagliyan-lab
Twitter: https://twitter.com/ODagliyan
Google Scholar: https://scholar.google.com/citations?user=SPL9J-UAAAAJ&hl=en
Teaching
Lecturer, “Neuronal circuits for appetite, food intake and satiety“, Karolinska Institutet, 2022-
Lecturer, “Protein Structure“, Karolinska Institutet, 2022-
Lecturer, “DNA and RNA Structure“, Karolinska Institutet, 2022-Lecturer, "Lipid Lab", Karolinska Institute, 2025-
Lecturer, “Introduction to biochemistry: Metabolism“, Karolinska
Institutet, 2022-
Teaching assistant, Macromolecular Equilibria course, 2012
Teaching assistant, Chemical and Biological Engineering Senior Project
course, 2009
Teaching assistant, Process Design course, 2008
Articles
- Journal article: NATURE NEUROSCIENCE. 2024;27(12):2267-2268Ernfors P; Castelo-Branco G; Uhlen P; Linnarsson S; Marklund U; Hjerling-Leffler J; Dagliyan O
- Article: SCIENCE ADVANCES. 2023;9(46):eadh1110Ripoli C; Dagliyan O; Renna P; Pastore F; Paciello F; Sollazzo R; Rinaudo M; Battistoni M; Martini S; Tramutola A; Sattin A; Barone E; Saneyoshi T; Fellin T; Hayashi Y; Grassi C
- Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2023;24(2):917Pastore F; Battistoni M; Sollazzo R; Renna P; Paciello F; Li Puma DD; Barone E; Dagliyan O; Ripoli C; Grassi C
- Journal article: BIOENGINEERING & TRANSLATIONAL MEDICINE. 2022;7(2):e10292Renna P; Ripoli C; Dagliyan O; Pastore F; Rinaudo M; Re A; Paciello F; Grassi C
- Article: NATURE COMMUNICATIONS. 2022;13(1):430Cakir B; Tanaka Y; Kiral FR; Xiang Y; Dagliyan O; Wang J; Lee M; Greaney AM; Yang WS; DuBoulay C; Kural MH; Patterson B; Zhong M; Kim J; Bai Y; Min W; Niklason LE; Patra P; Park I-H
- Article: CELL. 2021;184(22):5670-5685.e23Liu B; Stone OJ; Pablo M; Herron JC; Nogueira AT; Dagliyan O; Grimm JB; Lavis LD; Elston TC; Hahn KM
- Article: NATURE. 2021;590(7844):115-121Yap E-L; Pettit NL; Davis CP; Nagy MA; Harmin DA; Golden E; Dagliyan O; Lin C; Rudolph S; Sharma N; Griffith EC; Harvey CD; Greenberg ME
- Article: NATURE METHODS. 2020;17(9):928-936Wu HD; Kikuchi M; Dagliyan O; Aragaki AK; Nakamura H; Dokholyan NV; Umehara T; Inoue T
- Article: CELL REPORTS. 2020;31(11):107764Ozkan-Dagliyan I; Diehl JN; George SD; Schaefer A; Papke B; Klotz-Noack K; Waters AM; Goodwin CM; Gautam P; Pierobon M; Peng S; Gilbert TSK; Lin KH; Dagliyan O; Wennerberg K; Petricoin EF; Tran NL; Bhagwat SV; Tiu RV; Peng S-B; Herring LE; Graves LM; Sers C; Wood KC; Cox AD; Der CJ
- Article: CURRENT OPINION IN STRUCTURAL BIOLOGY. 2019;57:17-22Dagliyan O; Hahne KM
- Article: NATURE PROTOCOLS. 2019;14(6):1863-1883Dagliyan O; Dokholyan NV; Hahn KM
- Article: NATURE COMMUNICATIONS. 2018;9(1):4042Dagliyan O; Krokhotin A; Ozkan-Dagliyan I; Deiters A; Der CJ; Hahn KM; Dokholyan NV
- Article: PLOS COMPUTATIONAL BIOLOGY. 2018;14(8):e1006321Ma X; Dagliyan O; Hahn KM; Danuser G
- Article: ACS SYNTHETIC BIOLOGY. 2017;6(7):1257-1262Dagliyan O; Karginov AV; Yagishita S; Gale ME; Wang H; DerMardirossian C; Wells CM; Dokholyan NV; Kasai H; Hahn KM
- Article: SCIENCE. 2016;354(6318):1441-1444Dagliyan O; Tarnawski M; Chu P-H; Shirvanyants D; Schlichting I; Dokholyan NV; Hahn KM
- Article: NATURE CHEMICAL BIOLOGY. 2016;12(10):802-809Hodgson L; Spiering D; Sabouri-Ghomi M; Dagliyan O; DerMardirossian C; Danuser G; Hahn KM
- Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2016;291(8):3682-3692Shobair M; Dagliyan O; Kota P; Dang YL; He H; Stutts MJ; Dokholyan NV
- Article: JOURNAL OF MOLECULAR BIOLOGY. 2014;426(10):2082-2097Furukawa Y; Teraguchi S; Ikegami T; Dagliyan O; Jin L; Hall D; Dokholyan NV; Namba K; Akira S; Kurosaki T; Baba Y; Standley DM
- Article: BIOCHEMISTRY. 2013;52(40):7082-7090Freeman TCJ; Black JL; Bray HG; Dagliyan O; Wu YI; Tripathy A; Dokholyan NV; Leisner TM; Parise LV
- Article: CHEMISTRY AND BIOLOGY. 2013;20(6):847-856Kummer L; Hsu C-W; Dagliyan O; MacNevin C; Kaufholz M; Zimmermann B; Dokholyan NV; Hahn KM; Plueckthun A
- Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2013;110(17):6800-6804Dagliyan O; Shirvanyants D; Karginov AV; Ding F; Fee L; Chandrasekaran SN; Freisinger CM; Smolen GA; Huttenlocher A; Hahn KM; Dokholyan NV
- Article: PLOS ONE. 2012;7(2):e31787Cakir B; Dagliyan O; Dagyildiz E; Baris I; Kavakli IH; Kizilel S; Turkay M
- Article: STRUCTURE. 2011;19(12):1837-1845Dagliyan O; Proctor EA; D'Auria KM; Ding F; Dokholyan NV
- Article: PLOS ONE. 2011;6(2):e14579Dagliyan O; Uney-Yuksektepe F; Kavakli IH; Turkay M
- Article: JOURNAL OF CHEMICAL INFORMATION AND MODELING. 2009;49(10):2403-2411Dagliyan O; Kavakli IH; Turkay M
- Show more
All other publications
- Preprint: BIORXIV. 2025Garcia-Swinburn R; Lyu G; Kreutzmann J; Xiong A; Kojima R; Abaurre C; Tremolanti C; Gellhaar S; Uhlén P; Svenningsonn P; Castelo-Branco G; Salto C; Dagliyan O; Arenas E
- Dataset: 2016Dokholyan N; Dagliyan O
- Dataset: 2014Dokholyan N; Dagliyan O
- Review: JOURNAL OF MOLECULAR CELL BIOLOGY. 2014;6(2):104-115Redler RL; Shirvanyants D; Dagliyan O; Ding F; Kim DN; Kota P; Proctor EA; Ramachandran S; Tandon A; Dokholyan NV
Grants
- European Research Council1 May 2023 - 30 April 2028Protein signaling in cells is precisely coordinated in space and time. Molecular chemogenetics, optogenetics, and biosensors have generated a scientific revolution enabling the spatiotemporal codes of protein signaling in single cells. However, it is a great challenge to study protein dynamics in a physiological multicellular environment due to the extensive variability in protein signaling within individual cells, as well as the sparsity of driver cells responsible for a specific physiological process. To build causal relationships between proteins and multi-cellular behavior, we will develop broadly applicable technologies by engineering proteins enabling the control of target proteins with light, exclusively in the relevant driver cell subpopulations. These approaches can be used in any biological field in which protein signaling is critical for multi-cellular behavior, but here we will focus on three different stages of a challenging neurobiology process. Upon sensory experience, for example, by learning a new task, only the subsets of neurons within a corresponding brain region switch to the active state. It is largely unknown how proteins that are activated in these sparsely activated neuronal circuits operate in space and time. Our technologies will enlighten the spatiotemporal dynamics of proteins in active neuron subpopulations responding to certain learning tasks in mice. Understanding such learning neuronal circuit responses at the molecular level will pave the way to develop new therapeutic approaches for brain disorders including epilepsy, depression, and autism spectrum disorders.
- Swedish Research Council1 January 2022 - 31 December 2025
- Swedish Society for Medical Research
Employments
- Research Fellow, Neurobiology, Department of Neurobiology, Harvard Medical School, 2016-
- Assistant Professor, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, 2022-2028
